NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209648_10084587

Scaffold Ga0209648_10084587


Overview

Basic Information
Taxon OID3300026551 Open in IMG/M
Scaffold IDGa0209648_10084587 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2638
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameLaytonville, California, USA
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007233Metagenome / Metatranscriptome355Y
F033134Metagenome178Y
F037842Metagenome / Metatranscriptome167N
F044617Metagenome / Metatranscriptome154N
F065986Metagenome127N

Sequences

Protein IDFamilyRBSSequence
Ga0209648_100845871F044617AGGAGMSTSPQPTRQRQTVTAITAEERRELDKRVRDKHQRLRNRYPEIYGKVVDWIHHYIEDGTLYVCIRFQDKTDFALEFNPQIVRVGTELCDSATNDFDVIRNYYKEERE
Ga0209648_100845872F065986GGAMSNIAKRQGRMIRKGKEVRFGSVHIDLIGPTDLLHNREANGAAIDFLRTEILASKDWLKDCARISPSLKRFRLVSIRR
Ga0209648_100845873F037842AGGAGGLKQKTVKARGEGVEYPALISKVIRQVRFVNDDDYTALTIEFDDSTLVSFRFRASIAFSIDPELSTVKGGNIVKWKQLKTRPVMRRVARK
Ga0209648_100845874F033134AGGAMKQEQESKQLITFNSLHIEVLGPKELGNSQLAIRGVTEFLHSVELDVRNLLRERAETSPVLEGFRLRFG
Ga0209648_100845875F007233GGAGMANQKQKEHKRQLNLDTFRDGIKGRVLEAVSISNELECRYISLAFADKTELTITLDTRLTGKLELFDCKTGDHRLVRKIGLIPDDAPVWRPKD
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