Scaffold Ga0209648_10129166

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0209648_10129166

Scaffold Ga0209648_10129166

Overview

Basic Information
Taxon OID	3300026551 Open in IMG/M
Scaffold ID	Ga0209648_10129166 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2025
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	Laytonville, California, USA
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015579	Metagenome / Metatranscriptome	253	Y
F019106	Metagenome	231	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209648_101291661	F015579	GGGGG	LGSDSKKPPRPRHRFSFSGQTNQPEGPAKPREANVTRNDILNSLTKYAHPQEGQVKEAVEIQNPVQVLDSDQRAIPARTRNRGSARGALVVFLGGFLAVWLYGYATGAYEIPYLRGVTESPEVQVGAHLVSSSPILFGAVSVSVLLGALYLRRRKKN
Ga0209648_101291662	F019106	N/A	MASQIPLLTLARLLVLIGGIVLLVSGILEAINVGGLMDLGTNFVRLGSLTGIVVGILVGILALVGSREVANPAWSLILLILGLFVGSLGGILVFIGGLIGLVSHYVKV

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.