NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209648_10150352

Scaffold Ga0209648_10150352


Overview

Basic Information
Taxon OID3300026551 Open in IMG/M
Scaffold IDGa0209648_10150352 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1840
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameLaytonville, California, USA
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001448Metagenome / Metatranscriptome692Y
F012020Metagenome / Metatranscriptome284N
F051421Metagenome / Metatranscriptome144Y

Sequences

Protein IDFamilyRBSSequence
Ga0209648_101503521F051421N/AQPPFRKARRVVVVEATWHVKLTRRDHSRTVFTDYLNRVPKRGAIITLHIDGERVKLRIDVVHEQPRGQRAGSLGVFDVLATEVD
Ga0209648_101503522F001448AGTAGMPKKRRVYISRIVGNQVMMPADLKRLHKYMREVEHISIVSDEMREVVEELWPELAHKLPPKRSRS
Ga0209648_101503525F012020N/AMIRSHLARANRYIAELRADIARERVIIEHALDAGYPSAVAESMLHALEGALRIFEKHRGLILDELERQPSE
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