NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209648_10157415

Scaffold Ga0209648_10157415


Overview

Basic Information
Taxon OID3300026551 Open in IMG/M
Scaffold IDGa0209648_10157415 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1785
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameLaytonville, California, USA
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025584Metagenome / Metatranscriptome201Y
F035065Metagenome / Metatranscriptome173Y
F037102Metagenome / Metatranscriptome168Y

Sequences

Protein IDFamilyRBSSequence
Ga0209648_101574152F037102AGGAGGMNERTPEFTHQVLQPTMHQKIFLRAAELVAMGWTRGTAARDATGQKVRSTAPQATAWCVVGAVDRALYELLTVDVYALLGLEVNAYDTAPCPLEVLRVLRRPLERVLGRRDLAHWNDHGCPGPAAAEQLLRAAAATAARSCDWSRS
Ga0209648_101574153F035065GGAGGMTDREVEAILHFLRHFGSFGCRQISVRRTEPKPRTPEDVGRVVLESLAAWRAEGLDAERLYKVATIAIHFDAFKLPWSMCMLACCRPWGALEPACPPGPGRPLTGAQLQQALLRAVPIGPPPAPDAPLPDDLEEDLKRTGLAP
Ga0209648_101574154F025584N/ALDEPRRCGVFWIHHEAEELRVHHRTTIPADDARALVVTLLASGRVPPLQATLNLFDIESAVTRPVLQRFRGTACRCGEAVYLILFINERCLVLALSG
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