NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209577_10000300

Scaffold Ga0209577_10000300


Overview

Basic Information
Taxon OID3300026552 Open in IMG/M
Scaffold IDGa0209577_10000300 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)50323
Total Scaffold Genes59 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (40.68%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000283Metagenome / Metatranscriptome1379Y
F000336Metagenome / Metatranscriptome1274Y

Sequences

Protein IDFamilyRBSSequence
Ga0209577_1000030026F000283N/AMNSNIAKNFIARNVFLCATAIAITSCGTATFSKPGSDTQIESLRNFELAFIDAFAVPGKRFNAAAFDAKVNEGNAKFQQAIANEKFTARRPVLVDLKGQFDADAAHLRSKASRGKVSPALASEMKKDVNKIYDHALGR
Ga0209577_1000030027F000336N/AMPSAGKPKRKKSRKSELDSALNQVTDESVAASMKEFQDLLAQAKGDTSELIRQNAQELEERLVLLKERKIDKEDFDFFVENQKRDLRVFVDGQPAQSQERAEKLTLQILEIAATKVVPILIAMI
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