NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209577_10002340

Scaffold Ga0209577_10002340


Overview

Basic Information
Taxon OID3300026552 Open in IMG/M
Scaffold IDGa0209577_10002340 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18312
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (89.47%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007854Metagenome / Metatranscriptome343Y
F018762Metagenome233Y
F052529Metagenome142N

Sequences

Protein IDFamilyRBSSequence
Ga0209577_1000234010F052529GAGGMRQIAGFALVLVLVGTGGNLCFAQSKPMAAMRQPGGIQPSSAAETGVVPLTYPYSISTEPHFAVFVEFPKADSIRRIALGDSNYFLAEADKTDPHYAIVKQIEAPAAKSKTPLETNMLVYMASGRVVNITLKAGKLEDTAYSIDYSVPTAQPKDDPPPVSKEELEKRLRDQERSEIAEEMIAEVKDHPKSQPGVVAGGLDLRFYGTKHLGALALVAFDVENMSTATVDLEGPQVNLITASNNPKDRKKPLVKTEPVEVTQSVVSSKQLSPGERATCLVAFKPPMHDSDQQVVLSISNRAMADKPATYRLE
Ga0209577_1000234013F018762AGGAMRQHSRRFVVLSLATAIGLLVPVTARAFIGTMPVIDWTAVVRIGRQIGISQETLNTLGLYVQQYNRINAGVQEGVRLVRGRQLRGVLDQVVGSEFPQFAQLQRDFRSVLIDPSVLRADLELTYGSTPSRDFPISRKKRMDAADATATLGLLEASRAEMVSQQEELDADDIESRAGMASPGGAAKLSAAANGAMLRSQAYDQRLLARLMRLQALNIARENSLEKEREQSREDQVSAVSNLVGNMKLSYGIGDKVGQ
Ga0209577_100023402F007854GGAGMNTLIANQYGRVQGEAGGCGLTLCVTAQTPRRESVELQTRIDSVEQQLHLLAILRAVERRIEQFQLRDGEAGESADQQSPFDETVCGEDDLFRSNGSPSKNKIYGRFSQFLVYEQLDEGRLRVFFAVRDDVKRVARFDLHPGEVQAMHSLARRALFSCEQIGLLLRDELSVSVTLSASSHGLRFSVQSPLWRSEFVISKANDLATLTVFTRRAINQEKTIPIKFGGEVNQLSLRRRTDGQVLAEFQYDGAMERVALSTLQLYELEILAQYALHRAFEPMSFVAGTPVQPETATAA

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