NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0255274_1017621

Scaffold Ga0255274_1017621


Overview

Basic Information
Taxon OID3300026570 Open in IMG/M
Scaffold IDGa0255274_1017621 Open in IMG/M
Source Dataset NameMetatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Colum_RepB_8h (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1869
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.4271Long. (o)-81.6053Alt. (m)Depth (m)5
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035291Metagenome / Metatranscriptome172Y
F052478Metagenome / Metatranscriptome142N
F088827Metagenome / Metatranscriptome109N

Sequences

Protein IDFamilyRBSSequence
Ga0255274_10176211F052478N/AGAMLVLAGVFIGLYGLLVLLDDREPDGTVREGIAGAIKRRQSRE
Ga0255274_10176212F088827N/AVNLTQYALQYATVLAHLVPALEEHDSVICGYSAGPQKPDDPQPQNLSICIDNPWREPDQWVTIYSASHCEWWSHGEQYQLTFEQLLAYLRQLPRPLHSFSRYCEEDA
Ga0255274_10176214F035291AGGMAQTIPKAHPLLERVDRLASCEGHWLLIRDGEPETDCGHQWHQTPEAHLETCLREHWRGVSLGFAPSYCGYSDYSRTGLVGLSNYRVMTDKASTPDPNGAVLETGYGWNGRGVVLDLRYVTEDQLETIEALESYPLISEDDHSQLECEGVEADWGRESIADRVRTL
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.