NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208661_102084

Scaffold Ga0208661_102084


Overview

Basic Information
Taxon OID3300026623 Open in IMG/M
Scaffold IDGa0208661_102084 Open in IMG/M
Source Dataset NameHot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - ECH_C virus_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2758
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Yellowstone National Park
CoordinatesLat. (o)44.7219Long. (o)-110.7021Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F061983Metagenome / Metatranscriptome131Y
F076263Metagenome / Metatranscriptome118Y
F080245Metagenome115N
F080247Metagenome / Metatranscriptome115Y
F081547Metagenome / Metatranscriptome114Y
F087442Metagenome / Metatranscriptome110N

Sequences

Protein IDFamilyRBSSequence
Ga0208661_1020842F061983AGGVVPVKVFNDDGLLSEQEFDQVVKTRIYKGLKVLEIKDLGYDSFWRTTHYYELVAVSEGGGQFDCYYGDVIDVKKLKDVGAIVVKEGDSEPLRTMKTLVAKWYNKKLVEEEKAYEVCNTFV
Ga0208661_1020843F080247N/AMIVWGKLIECIIDADVNYLNGELFNNQFRVKGKFLVFGNLYTLEKTTPGGETIQICSPVDATFMTYYQGMVAIMSFYFRDRDLYANVSLTDPDTIKDFITMSTYYRKYGVSIPNVLDKIMYRKVPT
Ga0208661_1020844F076263GGAMLSVEDLNAILDDLEDMCARIPDGVTFHPTLEIHRHHANEETTYIKFDCRNHRYILTIVRTGVAKTTRISSREQLYRRLFPEYSPGYSGSYTEEFWGGE
Ga0208661_1020845F081547GGTGGMPYLRGVFINFGEETYYLSCGIVNGGNLDTETYTVNQPSLMMVRLGRDLYIVTSELKLIIPVEPIKTLLSSETSKVYNEVMSQGNEVKPA
Ga0208661_1020846F087442GAGGMMREGLVKAGDLVIDCKPCYVAGTGFTKDDIYVVSEGTVVFKWYDKIAVIIVGEEGTKVNLLDIVDVRFLVERNENCLATKL
Ga0208661_1020847F080245N/AMIFVWSARVIIPGFRDEVFVSPALINSYVQITEDVYEVGMFMVPHRGHALLFLPTMVIKVDDELMKNLEQTTIEDLNIPLNTISNVFT
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