NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208661_102778

Scaffold Ga0208661_102778


Overview

Basic Information
Taxon OID3300026623 Open in IMG/M
Scaffold IDGa0208661_102778 Open in IMG/M
Source Dataset NameHot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - ECH_C virus_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2269
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Yellowstone National Park
CoordinatesLat. (o)44.7219Long. (o)-110.7021Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008949Metagenome / Metatranscriptome325Y
F011097Metagenome / Metatranscriptome295Y
F023140Metagenome / Metatranscriptome211Y
F076262Metagenome / Metatranscriptome118N

Sequences

Protein IDFamilyRBSSequence
Ga0208661_1027781F023140N/AVFIGLATVPIYIVLKSFPFFIVFGAGILTTLSVLILFFYFLGAKFVGTWAILQKFAVTLPTSFVLSHLVKHLPADLFLDYIILFFVGYIISTPLIFLTYNVTKWLHGKKV
Ga0208661_1027782F076262AGGTGGMSFNPVIKGSYTLAAPQTVSVAASSSSPVSISFTPLGAGELYVYITLPSGVSASISIGGQSVSLSNGGNQFLIPANTPIGNITINNSNTTAVSVVVWALFIEVA
Ga0208661_1027783F008949AGGAGGMSSQTVQLGTQTITPKVQDLGNSYYIEFQVNITKYLNNPVNHTIDVKFVCNKYKQVPSTNPLSPPTTVQKTIQECVDEWYNQHKSVYEVA
Ga0208661_1027784F011097GGAGGMIRDVPIIGAVGTDPFTNLPVGGGPITGNNSFGQLLRFHPKYARLLILVTGLSGTSPSIQFTVGSYYGSNNYTLPPISSPQYVQIIGNENKTIITYLNTSWQVLQQVELPYNIFLNGVNVSWSVSGTSPSILAYIHFEFEDEEEGE
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