NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208661_103588

Scaffold Ga0208661_103588


Overview

Basic Information
Taxon OID3300026623 Open in IMG/M
Scaffold IDGa0208661_103588 Open in IMG/M
Source Dataset NameHot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - ECH_C virus_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1865
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Yellowstone National Park
CoordinatesLat. (o)44.7219Long. (o)-110.7021Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F056742Metagenome / Metatranscriptome137Y
F077499Metagenome / Metatranscriptome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0208661_1035882F077499AGGMRDVFVFPYESLKVVGYPKISNAEIIFILTITVPVGDHPNADSPMDEKMRFLSTYMPLEFQKMQYMKAIDRALDILKYSLYSNEDNVLFEIANKINDIYDVKELTNKVKDVECTKDLKQVDVTLTEAKRYIYPDLSLSKYASAQAKQLNMRKYEYYARIFQCYIEQDKDLDMLTLFRVSNTVYNYIRLNNLSNLVKKIQFKNDRIAQLMEKIKQRVKITLEAMADRRPVEPDVNVLNSITIRIKEIDLG
Ga0208661_1035883F056742GGAGGMFINEVEKVYQVKVKSCEDFCKFYVLFLSVAEMLYGKHYNYAIFKAITRGRPNLYMCLKCNSTLTAEESVTHTLQHMKQLGYKPLAYNENI
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