NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208028_100032

Scaffold Ga0208028_100032


Overview

Basic Information
Taxon OID3300026625 Open in IMG/M
Scaffold IDGa0208028_100032 Open in IMG/M
Source Dataset NameExtremophilic microbial mat communities from Yellowstone National Park, USA - BED_Mat_virus_6_15 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10377
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (85.71%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameYellowstone National Park, USA
CoordinatesLat. (o)44.7315Long. (o)-110.7113Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033508Metagenome / Metatranscriptome177Y
F047176Metagenome / Metatranscriptome150N
F065947Metagenome127Y
F072527Metagenome / Metatranscriptome121N
F099550Metagenome / Metatranscriptome103Y
F101506Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0208028_10003210F101506AGGMSEDVVARTRIGAVEERIRSLEEQISDIRTTQLRQLERQNYVLMLLAISLITTTINLVVLLMK
Ga0208028_10003212F072527GGAMSQAQNRLAELLQQAVLAFGADRVQVLQKIRQYIAATDCTVLNVQLQQITNINMLRMLQAAGVPQCIQATFYLQVNKALKGVTP
Ga0208028_10003214F033508AGGLAAEAAAAPFVSPTTLRRVSGSSTTQLTIPARVGHRHVLYDVFIAGQPQYGYADVSVGTRIFMRIPLYALNCVTVNPPGYKFQGKGFLWGLSDLFGAEHLPNAAEDEDINITLNAAATRIDAYYAEIQPQDVSSHTVPGGSDAKVKPFIEVLDTLVTTTGNGINVLNENMPTGLGLLDNNGRVKATTQFTLLTMFADYISTGTNFTEYSRLHIFDEDEELFTPLNHEGLFIDYTVTLGDLYMNWPQQLYFKPDQPYVFKPNHQVSVTADVPAVTGTGSKLRVGLIGVRERLG
Ga0208028_10003215F047176GAGGVSEVATRIFRFYITLNAGQANNGAQGNPSPFTITAPSGINRRIVEIRPWGTQAFEYQGNYDTELYHDIDSNDINTYHRPHYVALDINGTHEYSVVMTNNGTATGTFGVDLVVEESALAAGGAAAPAAGGA
Ga0208028_1000323F065947AGGMLKSNHMFNLDKIRSVLKRRKVDDLPCVAYGTGNLSRRVGRGYFFYDYDTSDEKEVERFRKYVQHTFYVVYVLFRTKHGVMVMSTLTFSFEQLRKYYDQFQAQFPSDYLWDIPLFLRLSEKWDWRTGAVVSPMPAIIDNPKNTDIYRLVREDMYPKKWYRTSD
Ga0208028_1000324F099550AGGAGMYLTEEIKKLLATKHKSMQIVWVPLGVLDEIAQIAEKLHLAINQTIIVLAIHALREAQPQQNNGTGHFLCPICLQEFVNGEDFLTHLKGDEDVKIKPHV
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