NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208028_100039

Scaffold Ga0208028_100039


Overview

Basic Information
Taxon OID3300026625 Open in IMG/M
Scaffold IDGa0208028_100039 Open in IMG/M
Source Dataset NameExtremophilic microbial mat communities from Yellowstone National Park, USA - BED_Mat_virus_6_15 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9633
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Adnaviria → Zilligvirae → Taleaviricota → Tokiviricetes → Ligamenvirales → Lipothrixviridae → Betalipothrixvirus → Sulfolobus islandicus filamentous virus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameYellowstone National Park, USA
CoordinatesLat. (o)44.7315Long. (o)-110.7113Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F063848Metagenome / Metatranscriptome129N
F076264Metagenome / Metatranscriptome118Y
F085905Metagenome111N
F087445Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0208028_10003910F087445N/AMTSSSVKPGDELIQRLLNMSEYDLKRVFKMIPIDKRLMLALDTIQEYQNLRSKFDNLFNAFAMNSPKVKEVMESAKKNRKPLDRLADMFMDLMETMLKSKAMTLTDEDREKLREKVREMIESEE
Ga0208028_10003913F063848N/AVAKKRRSVHDPTLSVIHYQEQLEKMAKAYEQSAPRRNQRAVNGFTILKQVQQTVRDYLNEVSEAMKKPVIAQLSVEFLGVAMAYLKASNEGLNSYALTGRVAQIATLKATDLMHTTTLTCSEIGEIINGLLKKLSGVINDPLTFTEHDGICEATVANPLTKLSVASASTGYTVSLTDILKAKTPEEVLMAK
Ga0208028_10003914F085905N/AVEEKLSFPSSRLSQFDYVAMNAYWLNVRLKYFTDPMLYAVATGIWVINLMDDVDIAETGTQKDFEYGLIYVYSNSRIDTLFIVALTHYFNVKREREYYRSIPMDALQSVMKSLVDFMNDKLKILDKLKEKIDERVVLMMWNQLYVFVMGFLYGLYGRDAEAVFQGVVARHLLPYSVLEVIRRYMRK
Ga0208028_1000398F076264N/AMDLYAVGGMSAISSAIQNMVNGLQNLFVALVDVFANAVNAIGNTLASLAQPIGYLVGVLAVFGSLIAIIYYVFRGRGGVGGLISGIKSFFTSFL
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