NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208028_100151

Scaffold Ga0208028_100151


Overview

Basic Information
Taxon OID3300026625 Open in IMG/M
Scaffold IDGa0208028_100151 Open in IMG/M
Source Dataset NameExtremophilic microbial mat communities from Yellowstone National Park, USA - BED_Mat_virus_6_15 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4462
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameYellowstone National Park, USA
CoordinatesLat. (o)44.7315Long. (o)-110.7113Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006070Metagenome / Metatranscriptome382N
F011233Metagenome / Metatranscriptome293N
F040183Metagenome / Metatranscriptome162N

Sequences

Protein IDFamilyRBSSequence
Ga0208028_1001513F040183AGAAGGVKIKYPFPQRFHYLTVLGKYLTPNTTIVASGANTGPLTANTVCDYVQTPNHKELAINLTIQAVSGTFSTGQGLTAHFDVLDPVEPQNVNVNSSERPPVLELKLNSTAITTAPTTIRFIIANGVATVWINGTSTALGNVNVPYIWQVRFAITGTSPSFSVVGTYEARE
Ga0208028_1001515F006070AGGMTLYRYLVVDLPIRDTNTHTYRTDPFDPLIPTQPGISLVRLGESVPPVRAFNIYVYNFANAALNVQMIANENAKNYEYGNLLDGLNYFTEESYPDFNVGSAVTVPAGSLSAPSVEPIQSDFYKDASERYLSVALTYSATPTSGFVRAHIDLFYEGF
Ga0208028_1001516F011233GAGLTIPWFLPFVKGWRYHVPELQRQLLSGIPVSFSGNFTVLNGQFPGYFVSAAVGTTDPNFITRASADGLTVIEVTVGDLRDARVYRNQMGEPNILSYGAYIRDFPLPVYALSLNGDGLPFYQSIKIEIIPRNQPAFITGFAANIIEIYDVNLFKESVKEFFESITPSTVPPVVPTPPRFVANEVVSTRLPVKVT
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