NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208028_100267

Scaffold Ga0208028_100267


Overview

Basic Information
Taxon OID3300026625 Open in IMG/M
Scaffold IDGa0208028_100267 Open in IMG/M
Source Dataset NameExtremophilic microbial mat communities from Yellowstone National Park, USA - BED_Mat_virus_6_15 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3368
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameYellowstone National Park, USA
CoordinatesLat. (o)44.7315Long. (o)-110.7113Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008949Metagenome / Metatranscriptome325Y
F011097Metagenome / Metatranscriptome295Y
F021133Metagenome / Metatranscriptome220N
F023140Metagenome / Metatranscriptome211Y
F076262Metagenome / Metatranscriptome118N

Sequences

Protein IDFamilyRBSSequence
Ga0208028_1002672F011097GGAGGMIRDVPLYTSGGTDPFTNSLFSTGLSTGGSPITGNGSNYQVLSFHPNYARLHIYITSLSGTSPSIQFTVGSPVGANYYTLPPITSPQYVYVVGNENKTIITYLNTSNVVLQQVELPYNIFFNGAYVSWSVSGTSPSISAYIHFEFEDEEEDEG
Ga0208028_1002673F008949AGGAGGMSSQTVTLGTQTITPKVQDLGNTYYIEFQVTVTKYLNNSTNQTIDVKFTCNKYRQVAVPRTDPLSPLVFQTVQKTIQECVDEWYAQHKSVYEVA
Ga0208028_1002674F076262AGGTGGVSFNPVIKGSYTLASPQTVSVAATGSATVSISFTPLGAGSLYVYITLPTGVTATISIGAQTVSLSSGSNQFLIPANVAIGNITINNSNTTAVSVVVWALFIEVA
Ga0208028_1002675F023140N/AVFIGLVTVPVYILLKPLPFFAVFGVGVLTTLTVLILFFYFLGAKFVGTWAVLQKFAVTLPTSLVLTRLVEDVPRNPYLEYVVLFLVGYTISTPLIFLTYFATRWLYVKKGRLNTPNL
Ga0208028_1002676F021133AGGTGGMSKRDDLIRQIYENGNYVIKRICEVEPNDDMANFSATDCIIGTANTHLALKIAKEKGYPPDVIEYLENQSKQEQWHCQLHIGKSPKPYDFKVAQKHREILLKYGVYVWMGVMPLLGEKIALAKAICWRRSDDPHFANKFATVDEYYHTTYPLLLLYKYATEEELEKIIELQKEYIEKIFN
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