NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208548_100270

Scaffold Ga0208548_100270


Overview

Basic Information
Taxon OID3300026627 Open in IMG/M
Scaffold IDGa0208548_100270 Open in IMG/M
Source Dataset NameHot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - ECH_C host_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)23806
Total Scaffold Genes39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)29 (74.36%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → Viruses → Adnaviria → Zilligvirae → Taleaviricota → Tokiviricetes → Ligamenvirales → Lipothrixviridae → Betalipothrixvirus → Sulfolobus islandicus filamentous virus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Yellowstone National Park
CoordinatesLat. (o)44.7219Long. (o)-110.7021Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F056742Metagenome / Metatranscriptome137Y
F063848Metagenome / Metatranscriptome129N
F070317Metagenome / Metatranscriptome123Y
F076263Metagenome / Metatranscriptome118Y
F080247Metagenome / Metatranscriptome115Y
F085905Metagenome111N

Sequences

Protein IDFamilyRBSSequence
Ga0208548_10027016F076263GGAMLSAEDLSAILDDLEDLCARIPDGVTFHPTLEIRRHHANEEATYIKFDCRDHKYTLTIVRTGVAKTTRVSSREQLYRRLFPEYSPGYSGSYTEEFWGGE
Ga0208548_10027017F080247N/AVIVWGKLIDCLIDADVNYLNGELFNSQFRVKGKFLAFGNLYTLEKMTPGGETIQVCVPIDATFIAYYQGMVAIMSFYFRDRDLYANVSLTDPDTIKDFIMMSTYYRKYGVSIPNVLDKIMYRKVPT
Ga0208548_10027020F085905GGAGGLSFPSSRLTQFDYVAMNAYWLNVRLKYFTDPMLYAVATGIWMINLMDDVDIAETGTQKDFEYGLIYVYSNSRVDTLFIVALTHYFNVKREREYYRSIPMDALQSVMKSLVDFMNDKLKILDKLKEKIDERVVLMMWNQLYVFVMGFLYGLYGRDAEAVFQGVVARHLLPYSVLEVIRRHTRK
Ga0208548_10027021F063848N/AVAKKRRSVHDPTLSVIHYQEQLEKMAKAYEQSASRRNQRAVNGFTILKQVQQTVSDYLNEVSEAMKKPIIAQLRVEFLGIAMAFLKASNEGLNSYALTGRMAQIATLKATDIIHTTTLTCAEVGEIINGMLKKLSGVTADPLTFTEDDGICKATVANPLTKLSVASASTGYTASLTDILKAKTPEEVLMAK
Ga0208548_10027035F070317AGAAGGMTQTVANNMPTLEEIKELNLEKVVKDAQEGEVCVVEKILKGKLTDLLPLIKDPATMSQRAMEFIQRRGDDIFYLIHCTTREGRNVKLLVRQSFDPKSTFYNLMKKYKSIKVGDEINIFYNPEKRRYDFLL
Ga0208548_10027039F056742GGAGGMFINEVEKVYQVKVKSCEDFCKFYVLFLSVAEMLYGKHYNYAIFKAITRGRPNLYMCLKCNSTLTAEESVTHTLQHMKQL
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