NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208548_101349

Scaffold Ga0208548_101349


Overview

Basic Information
Taxon OID3300026627 Open in IMG/M
Scaffold IDGa0208548_101349 Open in IMG/M
Source Dataset NameHot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - ECH_C host_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7283
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Marsarchaeota(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Yellowstone National Park
CoordinatesLat. (o)44.7219Long. (o)-110.7021Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042427Metagenome / Metatranscriptome158Y
F077500Metagenome / Metatranscriptome117Y
F092367Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0208548_1013494F042427AGGTGGMSNLETQTRSDIGGASSSSVPLPLTLPGCECPCHVGGEPYSCGAMCWHPQLDADEYVVELASSTNNVDHYVGLFAIYSGGKLKFIVFEPSNGSTQRFEVV
Ga0208548_1013495F092367AGGMSEKNVSINTTQRFKKIDATVAKILTMLYKDIELGLQDDVVVALKLLLYLLHVVEEKATTKEEKEVVRQVKSRIAEYVTGE
Ga0208548_1013497F077500N/ALARRLAYLGLGNYKEVSFEVWTHSTSREEAENDTICRRTRQGFVPVGTFDECLLDPVRRIRRRW
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