NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208548_101565

Scaffold Ga0208548_101565


Overview

Basic Information
Taxon OID3300026627 Open in IMG/M
Scaffold IDGa0208548_101565 Open in IMG/M
Source Dataset NameHot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - ECH_C host_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6445
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (76.92%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Elusimicrobia → unclassified Elusimicrobiota → Elusimicrobia bacterium GWA2_38_7(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Yellowstone National Park
CoordinatesLat. (o)44.7219Long. (o)-110.7021Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042426Metagenome / Metatranscriptome158N
F061049Metagenome / Metatranscriptome132Y
F063847Metagenome / Metatranscriptome129Y
F077501Metagenome / Metatranscriptome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0208548_1015651F042426N/AMEGNVKRLMDLPLKSIYTIGQGETKSGFEVYYLFEYKSGNFSEKADNVYMIYATTVLGEWLTENFEKLKKAIFELEIEFRDSQYNKKIAVPVRVKKIGDKPKAPVQVQEEGF
Ga0208548_1015652F061049N/AMSFFVIKFEKDNSIIKEWIFEGNEDLEKALVEMFDIDFQFIRKIRGLEK
Ga0208548_1015653F063847AGGGGGMRFKKYIFCYDQYSYLQDKVITHHVSIYAKNIKEAESKLEKLGYKDLYLKKKKRRSSY
Ga0208548_1015659F077501GAGGMNKKLLSLLILFSLLIPFANASTNSNLSITFIPENMSQSYYVNIHNLNNSFNATYQFNGINEITNLSSGIYYIKITSQNYNTLDIKLNLTQNTTLELFFNSNIIGYGIQNYYYLIFTVMLIIALFGVLITMVYYMKGVKIK
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Institute for Fundamental Biomedical Research
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