NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208548_102841

Scaffold Ga0208548_102841


Overview

Basic Information
Taxon OID3300026627 Open in IMG/M
Scaffold IDGa0208548_102841 Open in IMG/M
Source Dataset NameHot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - ECH_C host_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3768
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Yellowstone National Park
CoordinatesLat. (o)44.7219Long. (o)-110.7021Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033508Metagenome / Metatranscriptome177Y
F047176Metagenome / Metatranscriptome150N
F101506Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0208548_1028412F101506AGGMNEDAVARTRIGAVEERIRSLEEQISDIRTTQLRQLERQNYVLMLLAISLITTTINLVVLLMK
Ga0208548_1028415F033508AGGLAAEAAAAPFVSPTTFRRISGSSTTQLTIPARVGHRHVLYDLFVTNPPAYGYADVSVGTRIFIRIPFGAANVYTVFSPGYKFQGKGFLWGLSDLFGAENLPNAAEDEDINITLNAAATRIDAYYAEIQPQDVSSHSVPGGSDAKVKPFIEVLDTLVSTAGTGINVLNENMPTGLGLLDNNGRVKATTQFTLLTAFADYVSSGTNFTEYSRLHIFDEDEELFTPVNHEGLFIDYTIALGDLYMNWTVGQYWKPDQPYVFKPNHQVSVTADVPAVTGTGSKLRVALIGVRERLG
Ga0208548_1028416F047176GAGGVSAVATRIFRFYITLNAGQANNGAQGNPSPFTITAPSGINRRIVEIRPWGTQSFEYQGNYDTELYHDIDSNDINTYHRPHYVALDINGTHQYSIVITNNGTATGTFGVDVVVEESALTGGGAAAPAAGGA
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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