NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208548_104615

Scaffold Ga0208548_104615


Overview

Basic Information
Taxon OID3300026627 Open in IMG/M
Scaffold IDGa0208548_104615 Open in IMG/M
Source Dataset NameHot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - ECH_C host_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2384
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Yellowstone National Park
CoordinatesLat. (o)44.7219Long. (o)-110.7021Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011097Metagenome / Metatranscriptome295Y
F045200Metagenome / Metatranscriptome153Y

Sequences

Protein IDFamilyRBSSequence
Ga0208548_1046152F011097GGAGGMIRDVPLYTSGGTDPFTGLPVGGSPITGNGGNNQFLRFHPNYARLHIYITGLSGTSPSIQFTVGSPLGSNYYTLPPITSPIYIYVIGNENKTIITYLNTNAQVLQQVELPYNIFLNGAHVSWSVAGTSPSITTYIHFEFEDEEEDEE
Ga0208548_1046153F045200N/APDQYKPGAPASQWLDPPVLLVSYDQISRDVVNWADNVFTAAGYTPSSPGVINVPTNNSLVYVPNYGYVNYFGNPSTITLNFTGTPEPKQLHMIYDMLDDTVLMYFSITVPNWNPATKAQYVYKFPVSLLKSQQSINQYAVSGLTPTTTSTPPPNDKPYFLGGLKFDSTVEQTIGNALSPYPWGNALQMQSAPQFAISFDWYKLGGFMGYKPSNGFLPAIYVGNPLYMTVMFGINYNYPHGDTLIAIAFADIHKNPAQPQTYYQPIITTYGYAFPAFGAFNLPENLQTCPSSYGSNSYYCIPILGFAGLLDTFDLGLNIDKFGSIVPGESFGIHGTYVIPITLPPRPDWGGISSIRMKVLYVAPIFHQFQGYGGLSFAWTRDSVEIPYYPEMGTCRPYLTTLPDGKLKVTMGGYHADNYLDGIAIYIDKSVISPKGKTLVTVPSLIFGQTSPGGRYYVIAGANPFNSIYHGVVAHTFGKKYARVYLNINAGNAAFVNIYTRYRSRSAPDLQQMYGNSPNPNNTATYYPIVERNFGTLVYATDYSYNMPYATGYPRTSKFRVDDQVLWVLTRDGYGPVWVELEGD
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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