NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208548_105368

Scaffold Ga0208548_105368


Overview

Basic Information
Taxon OID3300026627 Open in IMG/M
Scaffold IDGa0208548_105368 Open in IMG/M
Source Dataset NameHot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - ECH_C host_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2067
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → Thermoplasmatales → unclassified Thermoplasmatales → Thermoplasmatales archaeon E-plasma(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Yellowstone National Park
CoordinatesLat. (o)44.7219Long. (o)-110.7021Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026606Metagenome / Metatranscriptome197Y
F052043Metagenome143Y

Sequences

Protein IDFamilyRBSSequence
Ga0208548_1053682F052043AGGAGMNENSYQRLKEIISELDYIFKKGKLALVKANGYDYVVSGYHISRDFIMFYFGKDFLDAYHYLDIQEIKELM
Ga0208548_1053685F026606GGAGGMENKENEYEKIEQKLEEFLGVEVGELREKIIEKAIWFNKDCSKMVVLRVYLNGSYDVGIGQQGSYDGLSNEERLWVEFSLIEPWDLPDFESVVQDENGDWVDQDNGDKFEGDELFDAVLSSVVSGFYDDFEYEWKKFLKEFDEWYEALKGNGE
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