NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208548_107974

Scaffold Ga0208548_107974


Overview

Basic Information
Taxon OID3300026627 Open in IMG/M
Scaffold IDGa0208548_107974 Open in IMG/M
Source Dataset NameHot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - ECH_C host_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1423
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Yellowstone National Park
CoordinatesLat. (o)44.7219Long. (o)-110.7021Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F061983Metagenome / Metatranscriptome131Y
F076263Metagenome / Metatranscriptome118Y
F080247Metagenome / Metatranscriptome115Y
F081547Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0208548_1079742F081547GGAGMPYLRGVFVNFGEETYYLSCGIVNGGSLDTETYTINSPELMMVRMGRDLYIVTSELKLIIPVEPIKTLLSSETSKVYNEISSQGNEVKPA
Ga0208548_1079743F076263GGAMLSAEDLSAILDDLEDLCARIPDGVTFHPTLEIRRHHANEEVTYIKFDCRDHKYTLTIVRTGVAKTMRVSSREQLYRRLFPEYSPEYSGSYTEEFWGGE
Ga0208548_1079744F080247N/AMIVWGKTIECIIDADVNYLNGELFNSQFRVKGKFLVFGNLYTLEKTTPGGETIQICSPVDATFMAYYQGMVAVMSFYIKEKDIYANVSLTDPDAIKEFMTMSTYYRKYGVSIPNVLDKIMYHKVPT
Ga0208548_1079745F061983N/AGVLSEQEFEHVKKTRIYKGMKVLEIKDLGFDSFWRFIHYHELVVVTEGDGLFDCYYGDVIDVKKLKDVGAIVVKEKDIQPVRTMKTLVAKWYNKKLVEEEKAYEMCTKFVM
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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