NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208342_104220

Scaffold Ga0208342_104220


Overview

Basic Information
Taxon OID3300026723 Open in IMG/M
Scaffold IDGa0208342_104220 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from Chapel Hill, North Carolina, USA that are Nitrogen fertilized - NN357 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)513
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized

Source Dataset Sampling Location
Location NameChapel Hill, North Carolina, USA
CoordinatesLat. (o)35.913Long. (o)-79.056Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004492Metagenome436Y

Sequences

Protein IDFamilyRBSSequence
Ga0208342_1042201F004492N/AGGTEEDARETKSGVENPAYAHGIVVKMGAQQEFSFFDHFEELLFDRIGTPPRNSAANVEQIRQTTNDRIDNTVFEMNKFVVDKNPMVGLAWRNIHDAVQAKFKDVPEPARQKQIEDLTKQTYYVYVFLDLYARMDDLRSRGSMSPNDDMIVQWKRSWLPNLMRSELGRWML

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