NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208559_101003

Scaffold Ga0208559_101003


Overview

Basic Information
Taxon OID3300026762 Open in IMG/M
Scaffold IDGa0208559_101003 Open in IMG/M
Source Dataset NameExtremophilic microbial mat communities from Yellowstone National Park, USA - BED_Mat_host_6_15 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4682
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Adnaviria → Zilligvirae → Taleaviricota → Tokiviricetes → Ligamenvirales → Lipothrixviridae → Alphalipothrixvirus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameYellowstone National Park, USA
CoordinatesLat. (o)44.7315Long. (o)-110.7113Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F056742Metagenome / Metatranscriptome137Y
F070317Metagenome / Metatranscriptome123Y
F077499Metagenome / Metatranscriptome117Y
F077502Metagenome / Metatranscriptome117N

Sequences

Protein IDFamilyRBSSequence
Ga0208559_1010032F056742AGGMKLADCRYKCKQTYFRKSIFVKMFVKEVEKVYGIRLKTCEDFCKFYVLFLSVAEMLYGKHYNYGIFKAIVRGKPNLYMCVKCNQPFTAEESITHTLQHMKTLGYKPLAYKEEI
Ga0208559_1010033F077499AGGMRNVFVFPYESLKAVGYPKITNAEIIFILTITIPIGDHPNADSPMEEKIRFLDMYMPLEFQKIQYLKTIDKALDILKYSLYSREDNVLLELADKINSMYNVKKLVEKIKDTECTKDLNNIKVTLTEAKRYIYPDPSLSKYASAQAKQLNIRKYEYYARIFECYVEQDKDLDMLTLYRASNLVYNYIRLNNLSSLTKKTKFKNDKIAQLAEKIKQRVDITLKAMAEKKIIETNEGLLNSITIKIKEIDLG
Ga0208559_1010035F077502GAGMPGHGTDTAHIILWIERNLPEEGKLSELIDNIFSLITEIILSNLSQGKQPITFTSVREIADAFKEMIYRSVEQTVGTLTEDVKNQIDTYFFKKLNDIYDKYYS
Ga0208559_1010036F070317AGAAGGMMQTEVHNMSNLEEVKELNLEKIAKDAQEGEVCTVNKILKGKLTDLIPLIRDPANLSQKAMDFIQRRGEDIFYLIQCTTREGRNIKLLVRQSFDPKSMFYGLMRKYKSIKVGDDINVFYNPEKRRYDFVL
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