NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208559_101144

Scaffold Ga0208559_101144


Overview

Basic Information
Taxon OID3300026762 Open in IMG/M
Scaffold IDGa0208559_101144 Open in IMG/M
Source Dataset NameExtremophilic microbial mat communities from Yellowstone National Park, USA - BED_Mat_host_6_15 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4198
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameYellowstone National Park, USA
CoordinatesLat. (o)44.7315Long. (o)-110.7113Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024140Metagenome / Metatranscriptome207Y
F067920Metagenome / Metatranscriptome125N
F084461Metagenome / Metatranscriptome112N

Sequences

Protein IDFamilyRBSSequence
Ga0208559_1011443F067920N/AMPADLVFGISDQGLFGAISSTLEYILSFLKTLVEQASKYAVDFLKQLWSNPTQTITFLTLLGVLLV
Ga0208559_1011444F084461AGGMSFDLASLIKNNKAILQTENGKIVLRISFDDLVQAMINGLPEQSRKVVSITHDGKQLIISFDASILSGMVGLIAR
Ga0208559_1011447F024140N/AMNWKPSSLSHIVSILALMISVLGINAITFYFMHTLDISQFFFLQLTNITFGIGMSYYAVNFAMSEKGVTIQSKPETTA
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