NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208559_101690

Scaffold Ga0208559_101690


Overview

Basic Information
Taxon OID3300026762 Open in IMG/M
Scaffold IDGa0208559_101690 Open in IMG/M
Source Dataset NameExtremophilic microbial mat communities from Yellowstone National Park, USA - BED_Mat_host_6_15 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3049
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameYellowstone National Park, USA
CoordinatesLat. (o)44.7315Long. (o)-110.7113Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F075084Metagenome / Metatranscriptome119N
F080245Metagenome115N
F081547Metagenome / Metatranscriptome114Y
F087442Metagenome / Metatranscriptome110N

Sequences

Protein IDFamilyRBSSequence
Ga0208559_1016905F081547GGTGGMPYLRGVFINFGEETYYLSCGIVNGGNLDAETYTIKEPELMMVRLGRDIYIVTSQLKLLIPVEPIKTLLSSETSKVYNEMLSQGNEVKPA
Ga0208559_1016906F087442GAGGMMREGLVKAGNLVVDCKPCYVAGTGFTKDDIYVISEGTVVFKWYDKIAVVAVGEEGTKVNLLDIVDVRFLVERNESCMVTKL
Ga0208559_1016907F080245AGGALHGDKTVIFVWSARVIIPGFRDEVFVSPALINRYAELTEDVYEVGMFMVPHKGHTLLFLPTMVIKVDDELMKNLEQTTIEDLNIPLNTISNVFT
Ga0208559_1016908F075084GAGVRPCQKDICLLYSLGADYAKLIDFTNQNFQGKLFRAGARAMIYARRLMASWYGYDTGVLIETALRRILRRSITYCNIMRRLGLESEYCRRYIIYDAVPCDLVSVFTVDVAYGDIIHMIANYNSENVSKILTKMTEMCSTYEVR
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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