NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208559_102430

Scaffold Ga0208559_102430


Overview

Basic Information
Taxon OID3300026762 Open in IMG/M
Scaffold IDGa0208559_102430 Open in IMG/M
Source Dataset NameExtremophilic microbial mat communities from Yellowstone National Park, USA - BED_Mat_host_6_15 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2239
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameYellowstone National Park, USA
CoordinatesLat. (o)44.7315Long. (o)-110.7113Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045200Metagenome / Metatranscriptome153Y

Sequences

Protein IDFamilyRBSSequence
Ga0208559_1024302F045200N/AIDNPFFFVAGHYPGGLSPTGAPEDRTYLVWFGSPAGTTNEKPLFSVFYAKVHPERYVPNAPAETWLDPPVLLVSYDQISSDVVNWADNVFTSAGYTPSSPGVISVPGNTGYIPNYGYVGYPNSPSPITFNFTGTPELKQLHMIYDMLDDTVLMYFSITVPNWNPGTKAQYVYKFPVSLLKSQQSINQYAVSGLTPTTTSTPPPNNEPYFLGGLKFDSTVEQTIVKALLSIAWGNTMQMQSAPQFAISFDWYKLGGFMGYKPSNGFLPAIYVGNSLYMTAMSGINYNYPHGDSLMAIAFADIHKNPAQPQTYYQPIITAYGQAFIAFNGLPENLGSCPSSYGSNTYYCIPILGFAGQLDTFDLGLNIDKFGSIVPGESFGIHGTYVIPITLPPRPDWGGISSIRMKVLYIAPIFHQFQGYGGLSFAWTRDSVEIPYYPEMGTCRPYLTTLPDGKLKVTMGGYHADNYLDGIAVYLDKTVMSPKGKTLVTVPSFIFGQTSSGGSYYVIAGANGANAIYHGVVAHTFGKKYARVYFNINAGNPAFVNIYTRYRSRSAPDLQQMYGNSPNPNNTATYYPVVERNFGTLVYAADYAYNMPYALEYSRTSKFIVDGQVLWVLTNGSHGPVWVELEGD
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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