Scaffold Ga0208448

Basic Information
Taxon OID	3300026813 Open in IMG/M
Scaffold ID	Ga0208448_100005 Open in IMG/M
Source Dataset Name	Extremophilic microbial mat communities from Yellowstone National Park, USA - OSPB_Mat_virus_9_15 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300026813 Open in IMG/M

Scaffold ID

Ga0208448_100005 Open in IMG/M

Source Dataset Name

Extremophilic microbial mat communities from Yellowstone National Park, USA - OSPB_Mat_virus_9_15 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	22430
Total Scaffold Genes	36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	23 (63.89%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

22430

Total Scaffold Genes

36 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

23 (63.89%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (57.14%)

Associated Families

Taxonomy
All Organisms → Viruses → Adnaviria → Zilligvirae → Taleaviricota → Tokiviricetes → Ligamenvirales → Lipothrixviridae → Betalipothrixvirus → Sulfolobus islandicus filamentous virus	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Adnaviria → Zilligvirae → Taleaviricota → Tokiviricetes → Ligamenvirales → Lipothrixviridae → Betalipothrixvirus → Sulfolobus islandicus filamentous virus

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location Name	Yellowstone National Park, USA
Coordinates	Lat. (^o)	44.733	Long. (^o)	-110.709	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Yellowstone National Park, USA

Coordinates

Lat. (^o)

44.733

Long. (^o)

-110.709

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F061983	Metagenome / Metatranscriptome	131	Y
F063848	Metagenome / Metatranscriptome	129	N
F075084	Metagenome / Metatranscriptome	119	N
F080245	Metagenome	115	N
F081547	Metagenome / Metatranscriptome	114	Y
F085905	Metagenome	111	N
F087442	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208448_10000514	F075084	AGCAGG	MIYARRLMASWYGYDTGVLIETALRRILRRSITYCNIMRRLGLESEYCRRYTQYNGVPCDLVSVFTVETTYADILHMIVNYNSENVSKVLTKMTEMCSTYEVR
Ga0208448_10000515	F080245	N/A	VIIPGFRDEVFVSPALINMYAELTEDVYEVGMFMVPHKGHALLFLPTMVIKVDDELMKSLEQTTIEDLNIPLNTISNVFT
Ga0208448_10000516	F087442	GAGG	MMREGLVKAGNLIIDCKPCYVAGTGFIKDDIYVISEGTVMFKWYDKIAVITVGEEGTKVNLLDIVDVRFLVERNESCMVTKL
Ga0208448_10000517	F081547	GGTGG	MPYLRGVFVNFGEETYYLSCGIVNGGSLDTETYTVNQPSLMMVRLGRDLYIVTSELKLIIPVEPVRVLLNSETSKVYNEMLSQGNEVKPA
Ga0208448_10000520	F061983	AGGAGG	LKKYVFKVKVVQIKLINEEGVLSEQEFEHVKKTRIYKGMKVLEIKDLGFDSFWRFTHYYELVAVSEGGGLFDCYYSDVIDVKKLKDVGAIVVKEQDIQPVRTMKTLVAKWYNKKLVEEEKAFETCTKFIM
Ga0208448_10000522	F085905	N/A	MEEQLSFPSSRLSQFDYVGMNAYWLNTRLRYFTDPMLYAVATGIWVINLMDDVDIAETGTEKNFEYGLIYVYSNSRIDSLFIVALTHYFNVKREREYYRSIPMDALQSVMKSLVDFMNDKLKILDKLKEKIDERVVLMMWNQLYIFVMGFLYGLYGRDAEAVFQGVMARYLLPYSVLEVIRRHLKK
Ga0208448_10000523	F063848	N/A	VAKKKRSVHDPTLSVIHYQEQLDKMSKAFEKSSTRRNQRAVNGFTVLKQVQNTVRDYLNEVSASMKAPVIAQLAVEFIGIAMAYLKGSNEGYNSYALTGRVAQIATLRATHIVHATTLTCAQVGEIINGMLKKLSGVTADPLTFTENDGVCEAKVANPLIKLSVASAGTGLTVALADIFKANTPEEVLMGK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208448_100005

Overview

Ecosystem & Geography

Associated Families

Sequences