NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208448_100096

Scaffold Ga0208448_100096


Overview

Basic Information
Taxon OID3300026813 Open in IMG/M
Scaffold IDGa0208448_100096 Open in IMG/M
Source Dataset NameExtremophilic microbial mat communities from Yellowstone National Park, USA - OSPB_Mat_virus_9_15 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6088
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Sulfolobales → Sulfolobaceae → Sulfolobus → Sulfolobus islandicus → Sulfolobus islandicus Y.N.15.51(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameYellowstone National Park, USA
CoordinatesLat. (o)44.733Long. (o)-110.709Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008949Metagenome / Metatranscriptome325Y
F011097Metagenome / Metatranscriptome295Y
F021133Metagenome / Metatranscriptome220N
F045200Metagenome / Metatranscriptome153Y
F076262Metagenome / Metatranscriptome118N

Sequences

Protein IDFamilyRBSSequence
Ga0208448_1000961F021133N/AMGRRDDLIRQIYENGNYAIKKICEMNPDDKMANFSATDCIIGTANTHLALKIAKEKGYPQDVIEYLENQSKQEQWHCKLHIGKPPKPYDFVVAQKHREILLKYGIYVWMGVMPLLGEKIALAKAICWRRNDDPHFVNKFATVDEYYHTTYPLLLLSKYASEEELEKIVELQKEYIVNIFKLK
Ga0208448_1000964F076262AGGTGGMSFNPVIKGSYTLATPQTVSVAASSSSSVSISFTPLGAGELYVYITLPSGVSASISIGGQSVSLANGSNQFLIPANTPIGNITINNSNTTAVTVVVWALFIEVA
Ga0208448_1000965F008949AGGAGGMSSQTVQLGTQTITPKVQDLGNSYYIEFQVNITKYLNNPVNQTIDVKFICNKYKQVPGANPLSPPTVQTVQKTIQECVDEWYNQYKSVYEVA
Ga0208448_1000966F011097GGAGGMLRDVVLYTSGGTDPFTGLSTRGSPITGNGSNYQLLRFHPSYARLIILITGLAGTSPSIQFTIGTTYGSNNYTLLPIISSPQYVYIIGNENKTIITYLNTSWQVLQQVELPYNIFLNGVNVSWSVSGTSPSITAYIHFEFEDEEEGEE
Ga0208448_1000967F045200N/ATTNEKPQFSIFYAKVHPDQYKPGALASTWLDPPVLLVSYDQISRDVVNWADNVFTAAGYTPSSPGVINVPSNVYVTNYGYTTYYTAPSTVTLNFTGTPELKQLHMIYDMLDDTVLMYFSITVPNWNPATKAQYVYKFPVSLLKSQQSINQYAVSGLTPTTTSTPPPNDKPYFLGGLKFDSTVEQTIGNAFDTLGNTLQMQSAPQFSISFDWYKLGGYMGYKPSNGFLPAIYVGNPVYMNAMNSVNYNYPHGDSLMAIAFADIHKNPAQPQTYYQPIITNYGYPFPGFGFLPENLESCPSSYGSNSYYCIPILGFAGQLDPFDLGLNIDKFGSIVPGESFGIHGAYAIPITLPPRPDWGGISSIRMKMLYVAPIFHQFQGYGGLSFAWTRDSVEIPYYPEMGTCRPYLTTLPDGKLKVTMGGYHADNYIDGIAIYIDKSVISPKGKTLVTVPPIIFGQTSPGGSYYAIAGANGSNNFISHGVVAYTFGKKYARVYFNMNANNAGFVNIYTRYRSRSAPDLQQMYGNSPNSGIVYSPVIERNFGTLVYYSDYSYGMPSQLYYSRTSKFRVDGQVLWIFSTGGYPSMGGIGPVYIELEGD
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