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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300026813 Open in IMG/M |
| Scaffold ID | Ga0208448_100136 Open in IMG/M |
| Source Dataset Name | Extremophilic microbial mat communities from Yellowstone National Park, USA - OSPB_Mat_virus_9_15 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5022 |
| Total Scaffold Genes | 12 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (75.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Yellowstone National Park, USA | |||||||
| Coordinates | Lat. (o) | 44.733 | Long. (o) | -110.709 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F033508 | Metagenome / Metatranscriptome | 177 | Y |
| F065947 | Metagenome | 127 | Y |
| F072527 | Metagenome / Metatranscriptome | 121 | N |
| F099550 | Metagenome / Metatranscriptome | 103 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208448_10013610 | F065947 | GAGG | MLKLNRTFNPFRIFGVLRHHNNTNNLPCVAYGTGNLSRRIGRGYFFYDYDTSDEKEVERFRKYVQHTFYVAYVLFRTKHGVMVMTTLTFPYEQLRKYYDQFQANFPSDYLWDIPLFLRISEKWDWQTGKVLSPMPQIIDNPKKIDIYKLIHEDMYPKKWYRTSD |
| Ga0208448_1001362 | F033508 | AGG | VLYDLFVTNPPALGYADIAVGTRVFIRLPFQAANCVTVSNPGQKYQGKGFLWGLSDLFGAENLPNAAEDEDINITLNAAATRIDAYYAEIQPQDVSSHSLNGGSDAKVKPFIEILDTLVTTAGTGINVLNENMPTGLGLLDISGRVKATTQFTLLTMFADYVSSGTNFTEYSRLHIFDEDEELFTPLNHEGLFIDYTVTQGDLYMNFPQRLYFKPDQPYVFKPNHQVSVKADVAAVTGTGSTLRVALIGVRERLG |
| Ga0208448_1001364 | F072527 | N/A | MSQQPNRLAELLQQAVLAFGAERVQVLQKIRQYIAQTDCTVLNVQLQQITNINMLRMLQAAGVPQCMQATFYLQINKALKGVKT |
| Ga0208448_1001369 | F099550 | GAG | MFTLTEEEKKLLASKRKNMQIVWVPLSVLDEIAQIAEKLHLALNQTIIVLAIRALRGFPQQTNNGSAHFLCPICLQSFTNSADFLAHLRGDENVEIKPHI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |