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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300026813 Open in IMG/M |
| Scaffold ID | Ga0208448_100143 Open in IMG/M |
| Source Dataset Name | Extremophilic microbial mat communities from Yellowstone National Park, USA - OSPB_Mat_virus_9_15 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4958 |
| Total Scaffold Genes | 13 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (84.62%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Yellowstone National Park, USA | |||||||
| Coordinates | Lat. (o) | 44.733 | Long. (o) | -110.709 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F033508 | Metagenome / Metatranscriptome | 177 | Y |
| F065947 | Metagenome | 127 | Y |
| F072527 | Metagenome / Metatranscriptome | 121 | N |
| F099550 | Metagenome / Metatranscriptome | 103 | Y |
| F101506 | Metagenome / Metatranscriptome | 102 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208448_1001431 | F033508 | AGG | LAAEAAPTPFVSSTTMRRVSATNTSQLTIPARIGYRHVLYDVFLTGAGPYMYIDIAVGTRVFIRLPMQAGNCYVILQPGAKYQGKGFLWGLSDLFGAENLPNAAEDEDINITVNGTVTRIDAYYAEIKPQDVTSHTVPGGSDAKVKPFIEVLDTLVTTTGNGINVLNENMPTGLGLLDNSGRVKATTQFTLLTAFADYVSSGPNFTEYSRLHIFDEDEELFTPLNHEGLFIDYTVTIGDLFMNFPMGQYWKPDQPYVFKPNHQVSVKADVPAVTGTGSTLRVALIGVRERIG |
| Ga0208448_10014310 | F099550 | AGG | MYQLTDEIKKLLATKHKNMQIVWVPLPVLDEIAQIAEQLHLALNQTIIVLVIHALRESTPQPNNGSGHFLCPICLQEFDIADDFLAHLRGDEDVKIKPHV |
| Ga0208448_10014311 | F065947 | AGG | MLKSNHMFNLDKIRSVLKRRKIDDLPCVAYGTGNLSRRIGRGYFFYDYDTQSEEEVQRFRKYVQHTFYVAYVLYRTKHGVMVMSTLTFSFEQLRKYYDQFQQEFPSDYLWDIPLFLRLSEKWNWQTGQVVSAMPAIIDNPKQVDIYKLVREDMYPKKWYRTSD |
| Ga0208448_1001433 | F072527 | N/A | MSQTPNRLAELLQQAVLAFGAERVQVLQKIRQYIAQTDCTVLNVQLQQITNINMLRMLQAAGVPQCIQATFYLQINKALKGVTP |
| Ga0208448_1001435 | F101506 | AGTAGG | MNEDAVARTRIGAVEQRIHNLEEQINDIRATQLRQLERQNYVLMLLAISLITTTINLVVLLIK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |