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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300026813 Open in IMG/M |
| Scaffold ID | Ga0208448_100313 Open in IMG/M |
| Source Dataset Name | Extremophilic microbial mat communities from Yellowstone National Park, USA - OSPB_Mat_virus_9_15 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3413 |
| Total Scaffold Genes | 8 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (62.50%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Yellowstone National Park, USA | |||||||
| Coordinates | Lat. (o) | 44.733 | Long. (o) | -110.709 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F056742 | Metagenome / Metatranscriptome | 137 | Y |
| F070317 | Metagenome / Metatranscriptome | 123 | Y |
| F077499 | Metagenome / Metatranscriptome | 117 | Y |
| F077502 | Metagenome / Metatranscriptome | 117 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208448_1003132 | F070317 | GAG | MSAMEELKELNLERIVKDAQEGEVCVVNKILKGKLTDLMPLIKDPASLSQKAMEFIQNRGDDIFYLFQCTTRGGRNVKLLVRQSFDPRSTFYQLMKKYKTIKVGDEVNVFYNLEKRRYDFLL |
| Ga0208448_1003133 | F077502 | GAG | MTDVAHIVIWIEKNLPEEGKLSELIDNVFSLIQEIILNNLSQGKQPISFESVREIADTFKEVIYRSIEQTIGTLTEEVKQQVDAYFLKKLNDIYDKYYE |
| Ga0208448_1003135 | F077499 | AGG | MADLFIFPNESLKPVSYPNITNAEIIFVLTISIPIGSHPESDTPMEEKMKFLSTYTPLEFQKLYYMKTIDKALDILKHLLYTREDNVLFEIANKINSLYDVKELINKVKDVECAKDLKTLNITLTEAKRYIYPDISLSRYASSQAKQLGIKKYEYYARLFQCYVETDKNLDMLTLFRVSNLVFNFLRINNLSHIIKKMQFKDENINRIAEKIKQRVKITLDAMTDRKPIEADTNILNSITIRIKEIDLG |
| Ga0208448_1003136 | F056742 | GGAGG | MFITEVEKVYQVKINSCEDFCKFYVLFLSVAEMLYGKHYNYAIFKAITRGRPNLYMCLKCNSTLTAEESVTHTLQHMRQLGYKPLTYEENI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |