NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208448_100503

Scaffold Ga0208448_100503


Overview

Basic Information
Taxon OID3300026813 Open in IMG/M
Scaffold IDGa0208448_100503 Open in IMG/M
Source Dataset NameExtremophilic microbial mat communities from Yellowstone National Park, USA - OSPB_Mat_virus_9_15 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2773
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameYellowstone National Park, USA
CoordinatesLat. (o)44.733Long. (o)-110.709Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006070Metagenome / Metatranscriptome382N
F059131Metagenome134N

Sequences

Protein IDFamilyRBSSequence
Ga0208448_1005031F059131N/AQMGEPNILSYGAYIRGFPLPVYALSLSGDGLPFYQSIKIEIIPRNQPALITGFAANIIEIYDVELFKESVKEFFGSITPSPSTLPVPTPPGFVAEEVVSAKLPVRVT
Ga0208448_1005032F006070AGGVTLYPYLVVDLPITDTNTHTYRTDPFNPLAPTQPGISLVRLGESVPPVRAFNIYVYNFANAALNVQVIANENAKNYAYGNLLDGLNYFTEESYPDFDVGSAVGVPAGSLSTPSVEAIQSEFYKDAAERYISVALTYSTAPTTGFVRAHIDLFYQGF
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