NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208448_100554

Scaffold Ga0208448_100554


Overview

Basic Information
Taxon OID3300026813 Open in IMG/M
Scaffold IDGa0208448_100554 Open in IMG/M
Source Dataset NameExtremophilic microbial mat communities from Yellowstone National Park, USA - OSPB_Mat_virus_9_15 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2658
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameYellowstone National Park, USA
CoordinatesLat. (o)44.733Long. (o)-110.709Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008949Metagenome / Metatranscriptome325Y
F011097Metagenome / Metatranscriptome295Y
F021133Metagenome / Metatranscriptome220N
F023140Metagenome / Metatranscriptome211Y
F076262Metagenome / Metatranscriptome118N

Sequences

Protein IDFamilyRBSSequence
Ga0208448_1005542F011097GAGGMIRDVPLYTSGGTDPFTYQQTGGSPITGNGSNYQVLSFHPNYARLMIFITSLSGTSPSIQFTVGSYVGANYYTLPPITSPQYVYVVGNGNKTIITYLNTSNVVLQQVALPYNIFLNGCYVSWSVSGTSPSISAYIHFEFEDEEEGE
Ga0208448_1005543F008949AGGAGGMSSQTITLGTQTITPKVEDLGNTYYIEFQVKITKYLNNPVNKTIDVKFVCNKYKQVAVPRTDPLSPPVFQTVQKTIQECVEEWYAQHKSVYEVA
Ga0208448_1005544F076262AGGTGGVSFNPVIKGSYTLASPQTVSVAASSSATVSISFTPLGAGNLYVYITLPTGVTATISIGAQTVSLSSGSNQFLIPANVAIGNITINNSNTTAASVVVWALFIEVA
Ga0208448_1005545F023140N/ALKLHRRILLSNVFIGLVTVPVYIVLKPLPFFAVFGVGVLTTLTVLILFFYFLGAKFVGTWAVLQKFAVTLPTSLVLTRLVEDVPRNPYLEYVVLFLVGYMISTPLIFLTYHVTRWFYVKKGRLNTPNL
Ga0208448_1005546F021133AGGTGGMSKRDDLIRQIYENGNYVIKRICEMEPNDDMANFSATDCIIGSANTHLALWIAKEKGYPPDVIGYLENQSKQEQWHCQLHIGKSPKPYDFRVAQKHREILLKYGVYVWMGVMPLLGEKIALAKAICWRRNDDPHFANKFATVDEYYHTTYPLLLLYKYATEEE
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