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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300026813 Open in IMG/M |
| Scaffold ID | Ga0208448_100641 Open in IMG/M |
| Source Dataset Name | Extremophilic microbial mat communities from Yellowstone National Park, USA - OSPB_Mat_virus_9_15 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2499 |
| Total Scaffold Genes | 6 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Yellowstone National Park, USA | |||||||
| Coordinates | Lat. (o) | 44.733 | Long. (o) | -110.709 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F008949 | Metagenome / Metatranscriptome | 325 | Y |
| F011097 | Metagenome / Metatranscriptome | 295 | Y |
| F021133 | Metagenome / Metatranscriptome | 220 | N |
| F023140 | Metagenome / Metatranscriptome | 211 | Y |
| F030159 | Metagenome / Metatranscriptome | 186 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208448_1006411 | F030159 | N/A | TVPSLIFGQTSPGGTYYVISANSYHGVVTYTFGKKYARVYFNMNVYNAGFVNTYTRYRSRSAPDLQQMYGGSPTAGVYSPVVERNFGTLVYISDYSNNMPYDLYYPRTSKFRVDDQVLWIFSTGGFESMGGAGPVFIELEGD |
| Ga0208448_1006412 | F011097 | GGAGG | MIRDVVFYTSGGTDPFTSLTTGGSPITGNSSNYQFLRFHPNYARLHIYITGLSGTSPSIQFTVGTFAGSNNYTLPPITSPIYVYFIGNENRTIITYLNTSSQVLQQVELPYNIFLNGVNISWSVSGTSPSITAYIHFEFEDEEEDEE |
| Ga0208448_1006413 | F008949 | AGGAGG | MSSQTVQLGTQTITPKVEDMGNTYYIEFQVKITKYLNNPVNQTIDVKFTCNKYKQVVVPSANPLSPPTVQTIQKTIQECVDEWYNQHKSVYEVA |
| Ga0208448_1006415 | F023140 | GGTGG | LKFHERILLSNVFIGLTTVPIYIVLKSFPFFIVFGAGILTTLTVLILFFYFLGAKFVGTWAILQKFAVTLPTSFVLAHLVKHLPSNPLLDYIILFFVGYVISTPLIFLTYNVTRWLYGKK |
| Ga0208448_1006416 | F021133 | AGGTGG | MGRRDDLIREIYENGNYAIKKICEMGSDDNMANFSATDCIIGTANTHLALKIAKEKGYPPDVIEYLENQSKQEQWHCQLQIGKPPKPYDFVVAQKHREILLKYGIYVWMGVMQLLGEKTALAKAICWRREDDPHFVNKFATVDEYYHTTYPLLLLYKYASEEELERIVELQKEYITNIFKLK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |