NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208448_101678

Scaffold Ga0208448_101678


Overview

Basic Information
Taxon OID3300026813 Open in IMG/M
Scaffold IDGa0208448_101678 Open in IMG/M
Source Dataset NameExtremophilic microbial mat communities from Yellowstone National Park, USA - OSPB_Mat_virus_9_15 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1582
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameYellowstone National Park, USA
CoordinatesLat. (o)44.733Long. (o)-110.709Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008949Metagenome / Metatranscriptome325Y
F011097Metagenome / Metatranscriptome295Y
F030159Metagenome / Metatranscriptome186Y

Sequences

Protein IDFamilyRBSSequence
Ga0208448_1016781F030159N/APDWGGISSMRMKVLYVAPIFHQFQGYGGLSFAWTRDSVEIPFYPEMGTCRPYLTTLPDGKLKVTMGGYHSDNYIDGVAIYLDKSVISPKGKTLVTSPSLIFGQTSPGGSYYVISESPSSTNIIYQGVVTYTFGKKYARVYLNLNANNWGFVNIYTRYRSRSAPDLQQMYGQTPNPNNTSAYYPVVERNFGSLVYLSDYAYGMPFALEYPRTSRFRVDDQVLWVITTNSTSPVWVELEGD
Ga0208448_1016782F011097GGAGGMLRDVVLYTSGGTDPFTSLTTGGSPITGNSSNYQFLRFHPNYARLHIYITGLSGTSPSIQFTVGTFAGANFYTLPPITSPIYIYVIGNENRTIITYANTNAQVLQQVELPYNIFLDGVYVSWSVAGTSPSITTYIHFEFEDEEEDEE
Ga0208448_1016783F008949AGGAGGMSSQTVKLGTQTIAPKVQDLGNSYYIEFQVNITKYLNNPVNHTIDIKFSCNKYKQVVVPSANPLSSPTVQTVQKTIQECIDEWYNQHKSVYEVA
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Institute for Fundamental Biomedical Research
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