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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300026821 Open in IMG/M |
| Scaffold ID | Ga0208006_101909 Open in IMG/M |
| Source Dataset Name | Hot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - ECH_B nyco_MetaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4475 |
| Total Scaffold Genes | 7 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (85.71%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Yellowstone National Park | |||||||
| Coordinates | Lat. (o) | 44.7219 | Long. (o) | -110.7021 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F008949 | Metagenome / Metatranscriptome | 325 | Y |
| F011097 | Metagenome / Metatranscriptome | 295 | Y |
| F011233 | Metagenome / Metatranscriptome | 293 | N |
| F045200 | Metagenome / Metatranscriptome | 153 | Y |
| F076262 | Metagenome / Metatranscriptome | 118 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208006_1019092 | F011233 | GAG | LAIPWFLPFVKGWRYHVPELQRQLLSGIPVSFSSEYTILNGQFPGYFVSAAIGTTDPNFITRASADGLTVIEVTVGDLRDARVYRNQMGEPNILSYGAYIRDFPLPVYALSLNGDGLPFYQSIKIEIIPRNQPAFITGFAANIIEIYDVNLFKESVKEFFESITPTSTPTGVPPRFVAEEVVSTRLPVKVS |
| Ga0208006_1019094 | F045200 | GAGG | MSQGYITEEIGKVTLNQPEVVTLLSPIRDAQYLKSLQNPTSTAPDAGLGVIDNPFFFVAGHYPGGLSPTGAPEDRTYLVWFGSPKGTTNEKPQFSVFYAKVHPERYVPNAPAETWLDPPVLLVSYDQISSDVVNWADNVFTSAGYTPSSPGVINVPNNAGYIPNYGYVDYPNSPSPVTLNFTGTPELKQLHMVYDMLDDTVLMYFSITVPNWNPGTKAQYVYKFPVSLLKSQQSINQYAVSGLTPTTTSTPPPNDKPYFLGGLKFDSTIEQTIVNAFRGFTWGNAIQMQSAPQFAISFDWYKLGGFMGYKPSNGFLPAIYVGNPLYMTAMSGINYNYPHGDSLIAIAFADIHKNPAQPQTYYQPIMTSYGMAFPAFQGLPPNLESCPSSYGSNSYYCIPILGFAGQLDTFDLGLNIDKFGSIVPGESFGIHGAYAIPIALPPRPDWGGISSIRMKMLYVAPIFHQFQGYGGLSFAWTRDSVEIPYYPEMGTCRPYLTTLPDGKLKVTMGGYHADNYLDGVAIYLDKSAISPKGKTLVTVPPLIFGQTSPGGSYYVIAGANGPNSIYHGVVTHTFGKKYARVYLNINAGNNVFVNIYTRYRSRSAPDLQQMYGNSPNPNNTANYYPVVERSFGTLVYATDYSYNMPYALEYSRTSKFRVDGQVLWVLTNDGNGPVWVELEGD |
| Ga0208006_1019095 | F011097 | GAGG | MIRDVPLYTSGGTDPFSGLPVGGSPITGNGNNSQVLSFHPNYARLHIYITGLSGTSPSIQFTTGSPYGANFYTLPTITSPQYVYVIGNENKTIITYLNTSNAVLQQVELPYNIFFNGCYVSWSVGGTSPSISAYIHFEFEDEEEGGE |
| Ga0208006_1019096 | F008949 | AGGAGG | VSSQTVTLGTQTITPKVEDLGNSYYIEFQVKITKYLNNSTNQTIDVKFTCNKYKQVAVPRTDPLSPPVFQTVQKTIQECVDEWYAQHKSVYEVA |
| Ga0208006_1019097 | F076262 | AGGTGG | MSLNPVIKGSYTLASPQTVSVAASGSATVSISFTPLGAGNLYVYITLPTGVTATISIGAQTVSLSSGSNQFLIPANVAIGDITINNSNTTAVSVVVWALFIEVA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |