Scaffold Ga0207728_106453

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0207728_106453

Scaffold Ga0207728_106453

Overview

Basic Information
Taxon OID	3300026833 Open in IMG/M
Scaffold ID	Ga0207728_106453 Open in IMG/M
Source Dataset Name	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 54 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1145
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location Name	Luquillo Experimental Forest Soil, Puerto Rico
Coordinates	Lat. (^o)	18.0	Long. (^o)	-65.0	Alt. (m)		Depth (m)	.1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F014525	Metagenome	262	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207728_1064531	F014525	GGA	MNLHPFMRVTATLPLLYACATFHSENASAQVVDFGSIDAFESMGTGMQRGGSPPRTIVDDGERHTVLITMLESNTEAGIYWKSTDGDQTTVIRGSSVKTFRTAGQFKIGASGDENHNFKYGYMLFRLKNN

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