NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207728_122900

Scaffold Ga0207728_122900


Overview

Basic Information
Taxon OID3300026833 Open in IMG/M
Scaffold IDGa0207728_122900 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 54 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)553
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NameLuquillo Experimental Forest Soil, Puerto Rico
CoordinatesLat. (o)18.0Long. (o)-65.0Alt. (m)Depth (m).1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034284Metagenome / Metatranscriptome175Y
F046658Metagenome / Metatranscriptome151Y

Sequences

Protein IDFamilyRBSSequence
Ga0207728_1229002F034284AGGAGGMQGQSSDSQAKAAERLFVAVVNQAILDVLEHGEEAEDAKRWLLSEDFDALQNLFH
Ga0207728_1229003F046658N/ARTAKIAFGLIAAAFLLQFYYVRELVFMEAVVALGFVVVVLIGAVYALGCIAVLCLGKLGSGLRTLGALVIVRHRQPFAKTTVTGLSEAKEEVS

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