NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207728_124129

Scaffold Ga0207728_124129


Overview

Basic Information
Taxon OID3300026833 Open in IMG/M
Scaffold IDGa0207728_124129 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 54 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)536
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NameLuquillo Experimental Forest Soil, Puerto Rico
CoordinatesLat. (o)18.0Long. (o)-65.0Alt. (m)Depth (m).1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002057Metagenome / Metatranscriptome598Y
F048978Metagenome / Metatranscriptome147Y

Sequences

Protein IDFamilyRBSSequence
Ga0207728_1241291F048978GGAGMNWSWRTWLVVVLLIAVAGAALYFPALRRQVYKAKDITEKTAEQARRELLPPAPVTSGDPKVKVKMYWGSRSEPGQL
Ga0207728_1241292F002057N/ADRAQAPFTGLSHKLGDSVQAELARRFRGSPAAAQTAPVRQLRTTAAPAIAVEVASVSVQTRSELDRMIPGVAEGIASGVAAFRPSYILPSVPGVLPGQGAQQ

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