 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300026840 Open in IMG/M |
| Scaffold ID | Ga0209595_103701 Open in IMG/M |
| Source Dataset Name | Marine algal microbial communities from Porto, Portugal - Porto_4 metaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3115 |
| Total Scaffold Genes | 3 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Novel Protein Genes | 1 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
| Associated Families | 1 |
| Taxonomy | |
|---|---|
| Gigartinaceae → Chondrus → Chondrus crispus | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Marine → Genome And Metagenome Analysis Of Marine Red Algae Porphyra |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Portugal: Porto | |||||||
| Coordinates | Lat. (o) | 41.162 | Long. (o) | -8.622 | Alt. (m) | Depth (m) | 2 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F046156 | Metagenome | 151 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209595_1037012 | F046156 | AGGAG | MTSSTAVGPLPVLTDPSTWAPAWEREEARMGEADTLARATFRGIDSVRPANPFAKHNAARSHALVPSLDDRASSITVVRRSREVGYRRSHVGFMDDAPEDAPWVPTFAYILTSLPFIGASDKKDTTTVQSTTARNHHRGGLTGHLVARHRAEYLSCATATSSRLNLSTPAWCYGLEVPYGSKAELPWVPGDTTEDLHAGRHTPWAILRIEWARLEAPMSTGRMKHDGREGTTPRGCSSSECRRCRCVDGAGRRVSDH |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |