NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207802_1001132

Scaffold Ga0207802_1001132


Overview

Basic Information
Taxon OID3300026847 Open in IMG/M
Scaffold IDGa0207802_1001132 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 20 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2597
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NameLuquillo Experimental Forest Soil, Puerto Rico
CoordinatesLat. (o)18.0Long. (o)-65.0Alt. (m)Depth (m).1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F065335Metagenome / Metatranscriptome127Y
F102308Metagenome / Metatranscriptome101N

Sequences

Protein IDFamilyRBSSequence
Ga0207802_10011321F065335N/APAADGVLVAAAFTLHECAYCLSPIPSGQPWVREKIYEPSSHNGPCYRRYHADLFGDEELSCWEKHQMELEITRTARTAIPIV
Ga0207802_10011324F102308N/AEAKRASTLEIMVWFEYEHETLSRLALVITGDIGAAELSVCKARELVTNGASPFPFRKQLTEWLKRVTIEAAITSSLHEIARCESRYRYLNCTHSEHLLNGQDSKLRQFRNLLLHIDPEIVIDELDALARAVAILRTTGRASILDCILRLRLSLDTVLAANCRAMTWFAEKRTGLTDKATTPRQKLEKP
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