NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207503_1008962

Scaffold Ga0207503_1008962


Overview

Basic Information
Taxon OID3300026861 Open in IMG/M
Scaffold IDGa0207503_1008962 Open in IMG/M
Source Dataset NameSoil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G06A5a-12 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)605
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Source Dataset Sampling Location
Location NameWisconsin, United States
CoordinatesLat. (o)43.3Long. (o)-89.38Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045732Metagenome / Metatranscriptome152N
F064703Metagenome / Metatranscriptome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0207503_10089621F045732N/AMRHRRRRVFIDTQKGRVSAGFTVAAEADAADVSMRLRERGWIAYRLRLEAEQYAWIATVIDWARRAA
Ga0207503_10089622F064703N/AIVLMRKGLTVLIVAVLGVFAVKSVIGPGKMSLSEAVKYPVPTYDLHVAQPVDMKNFPSDVIPLP

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