NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207785_1008743

Scaffold Ga0207785_1008743


Overview

Basic Information
Taxon OID3300026872 Open in IMG/M
Scaffold IDGa0207785_1008743 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 74 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)937
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NameLuquillo Experimental Forest Soil, Puerto Rico
CoordinatesLat. (o)18.0Long. (o)-65.0Alt. (m)Depth (m).1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009542Metagenome / Metatranscriptome316Y
F024741Metagenome / Metatranscriptome204N
F086686Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0207785_10087431F086686GGGGGMSKFERLLEAGSTELPDCRCAAEMNLMAIVPVAGGDTEIRIFRCPD
Ga0207785_10087432F009542GGAGMSTMVKRVAQALQQEMGAAAFDETASFALARAAIAAMREPTEEMIDAWIRAPGAIKGGWQAMIDAALEGK
Ga0207785_10087433F024741GGAGMAKKRPSSAADYAEIVIQRKGQPALNGEMWVADGLLTVTSSDGRQKTAQVGNSRPAGLARLMLLELEEERLHGRPLSHSPETTE
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