NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208314_101673

Scaffold Ga0208314_101673


Overview

Basic Information
Taxon OID3300026877 Open in IMG/M
Scaffold IDGa0208314_101673 Open in IMG/M
Source Dataset NameExtremophilic microbial mat communities from Yellowstone National Park, USA - OSPB_Mat_host_9_15 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6366
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (72.73%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameYellowstone National Park, USA
CoordinatesLat. (o)44.733Long. (o)-110.709Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011233Metagenome / Metatranscriptome293N
F021133Metagenome / Metatranscriptome220N
F023140Metagenome / Metatranscriptome211Y
F045200Metagenome / Metatranscriptome153Y

Sequences

Protein IDFamilyRBSSequence
Ga0208314_1016731F021133AGGTGGMSKRDDLIRQIYENGNYAIKKICEMEPNDDMANFSATDCIIGSANTHLALKIAKEKGYPLDVIEYLENQSKQEQWHCQLHIGKSPKPYDFKVAQKHREILQKYGVYVWMGVMPLLGEKIALAKAICWRRNDDPHFANKFATVDEYYHTTYPLLLLYK
Ga0208314_1016732F023140N/AVFIGLVTVPVYIVLKPLPFLAVFGVGVLTTLTVLILFFYFLGAKFVGTWAVLQKFAVTLPTSLVLTRLVKDVPRNPYLEYVVLFLVGYTISTPLIFLTYFATRWLYVKKGRLNTPNL
Ga0208314_1016736F045200GAGGMSQGYITEEIGKVTLNQPEVVTLLSPIRDAQYLKSLQNPTSTAPDAGLGVIDNPFFFVAGHYPGGLSPTGAPEDRTYLVWFGSPAGTTNEKPLFSVFYAKVHPERYVPNAPAETWLDPPVLLVSYDQISSDVVNWADNVFTAAGYTPSSSGVVNVPNNVYVANYGYVNYYNASSTVTLNFTGTPELKQLHMVYDMLDDTVLMYFSIIVPNWNPGTKAQYVYKFPASLLKSQQSINQYAVSGLTPTTTSTPPPNNQPYFLGGLKFDDTVEQTIGNAMGTQWWNNTLQLQSAPQFAISFDWYKLGGYMGYKPSNGFLPAIYVGNPLYMTALGSFNYNYPHGDSLIGIAFADIHKNPAQPQTYYQPIITTYGQAFPALNGLPPNLGSCPSSYGSKTYYCIPILGFAIQLDVHDLGLNIDKFGSIVPGESLGIHGTYVIPITLPPRPDWGGISSMRMKMLYVAPIFHQFQGYGGLSFAWTRDSVEIPYHPEMGTCRPYLTTLPDGKLKVTMGGYHADSYIDGVAIYLDKSVISPKGKTLVTVPSLIFGQTSAGGSYYVISAFNYGPYAWHGVVTHTFGKKYARIYSQLNVGNFIFVNTYTSYRARDAPELQQMYGNTPSANSVYRVGMERNFGTLVYATNYSNNMPNILGNPRTSKFRVDDQVLWTIVDYNGFWNIWVELEGD
Ga0208314_1016738F011233GAGLAIPWFLPFVKGWRYHVPELQRQLLSGIPVSFNSEYTILNGQFPGYFVSAAIGTTDPNFITRASADGLTVIEVTVGDLRDARVYRNQMGEPNILSYGAYIRDFPLPVYALSLNGDGLPFYQSIKIEIIPRNQPAFITGFAANIIEIYDVNLFKESVKEFFESITPSTVPPVVPTPPRFVANEVVSTKLPIKVT
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