NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208314_104213

Scaffold Ga0208314_104213


Overview

Basic Information
Taxon OID3300026877 Open in IMG/M
Scaffold IDGa0208314_104213 Open in IMG/M
Source Dataset NameExtremophilic microbial mat communities from Yellowstone National Park, USA - OSPB_Mat_host_9_15 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3063
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (55.56%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameYellowstone National Park, USA
CoordinatesLat. (o)44.733Long. (o)-110.709Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042426Metagenome / Metatranscriptome158N
F048414Metagenome / Metatranscriptome148Y
F061049Metagenome / Metatranscriptome132Y
F063847Metagenome / Metatranscriptome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0208314_1042132F048414GGAGGMYFGELKESASTSLFYSFLLFVVSFIIVIAGLNYIWGRPALVWLPLGIWNLLITLGIFLSIMIILVIVARRLL
Ga0208314_1042136F063847AGGAGGMRFKKYIFCYDQYSYLQDRMITHHVSIYAKSLKEAESKLEKLGYKDIYLKKKKRKVIY
Ga0208314_1042137F061049N/AMSIFVIKFEKDSSVIREWVLKGNEDLERSLFEMLNIDFQFIDKIRRLEK
Ga0208314_1042138F042426GAGGMEGNVKRLMDLPLKSIYTIGQGETKSGFEVYYLFEYKSGNFSEKADNVYMVYATTVLGEWLTENFEKLKKAIFELEIEFRDSQYNKKIAVPVRVKKIGDKPKAPVQVEEEGF
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