NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208314_105119

Scaffold Ga0208314_105119


Overview

Basic Information
Taxon OID3300026877 Open in IMG/M
Scaffold IDGa0208314_105119 Open in IMG/M
Source Dataset NameExtremophilic microbial mat communities from Yellowstone National Park, USA - OSPB_Mat_host_9_15 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2615
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameYellowstone National Park, USA
CoordinatesLat. (o)44.733Long. (o)-110.709Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011233Metagenome / Metatranscriptome293N
F027904Metagenome / Metatranscriptome193N
F067921Metagenome / Metatranscriptome125N

Sequences

Protein IDFamilyRBSSequence
Ga0208314_1051192F067921GGGGGLLETFSRIEDRILRNGQYLLVSFSGSQHPEESSYTGFRVTKHNLTTLYYNFATEVPNFLPMAPFGGQASATTSPPYISNFKFSLQLAQNVTDMFDLSKNYDAYQVFYGIAPSYLRTMLQIQQQFIAVLEQNINPSPSFVEMGIDGFQSPLFAPDPRTEFIVFSNLTYNMTLMNTATIPIVPAFNFVINRMTLEPLSKQDIRKAMLAGFPIRTLGAVDSSISISREKYLGLQTVTYKEVYGGGM
Ga0208314_1051193F027904GGAGGVEHKYEPPDYDLFNLNNGSTTIGTSPVTLLYEGQPNAAVYAPPDLTLRVKQVIIQNTTSSPITVQLLAVAAPNTTLPSPIPKTPPIPVNANSAVTLSEDEWSISIRAGYALAAVSSAASSVNVFAKCYFTKGTGSPI
Ga0208314_1051195F011233AGCAGGMAIPWFLPFVKGWRYHVPELQRQLLSGIPVSFNSEYTILNGQFPGYFVSAAIGTTDPNFITRASADGLTVIEVTVGDLRDARVYRNQMGEPNILSYGAYIRDFPLPVYALSLNGDGLPFYQSIKIEIIPRNQPAFITGFAANIIEIYDVNLFKESVKEFFESITPSTVPPVVPTPP
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Biomedical Sciences Research Center "Alexander Fleming"
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