NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208314_111944

Scaffold Ga0208314_111944


Overview

Basic Information
Taxon OID3300026877 Open in IMG/M
Scaffold IDGa0208314_111944 Open in IMG/M
Source Dataset NameExtremophilic microbial mat communities from Yellowstone National Park, USA - OSPB_Mat_host_9_15 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1301
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameYellowstone National Park, USA
CoordinatesLat. (o)44.733Long. (o)-110.709Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F076263Metagenome / Metatranscriptome118Y
F081547Metagenome / Metatranscriptome114Y
F087442Metagenome / Metatranscriptome110N

Sequences

Protein IDFamilyRBSSequence
Ga0208314_1119443F087442GAGGMMREGLVEAGNLVIDCKPCYIAGTGFTKDDIYMVSEGIVVFKWYDKIAVITVGKEGTKVNLLNIIDVRFLVERNENCVAIRL
Ga0208314_1119444F081547GAGMPYLRGVFVNFNEETYYLSCGIVNGGNLDTETYTIKEPELMMVRMGRDIYIVTSELKLLIPVEPVRVLLNSETSKVYNNMLSQGNEVRLL
Ga0208314_1119445F076263N/ALEDLCARIPEGVIFHPTLEIRRKYANEEATYIKFDCRNHRYTITIIREGIARTARVSSREELFRRLFPEYFPGFAGIYTEEFLGEE
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