NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208313_104595

Scaffold Ga0208313_104595


Overview

Basic Information
Taxon OID3300026882 Open in IMG/M
Scaffold IDGa0208313_104595 Open in IMG/M
Source Dataset NameExtremophilic microbial mat communities from Yellowstone National Park, USA - OSPB_Slides-mat_host_7_15 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2073
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameYellowstone National Park, USA
CoordinatesLat. (o)44.733Long. (o)-110.709Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008949Metagenome / Metatranscriptome325Y
F011097Metagenome / Metatranscriptome295Y
F023140Metagenome / Metatranscriptome211Y
F030159Metagenome / Metatranscriptome186Y

Sequences

Protein IDFamilyRBSSequence
Ga0208313_1045951F023140N/ALHERILISNIFIGLTTVPIYIFLKSFPFFIVFGAGILTTLTVLILFFYFLGAKFVGTWAILQKFAVTLPTSFVLAHLVKHLPSNPLLDYIILFTIGYSISTPLIFLTYYITRLLYNKKG
Ga0208313_1045953F008949AGGAGGMSSQTVKLGTQTITPKVQDLGNSYYIEFQVNITKYLNNPVNQTIDVKFVCNKYKQVVVPSANPLSPPTVQTVQKTIQECVDEWYNIHKSVYEVA
Ga0208313_1045954F011097GGAGGMIRDIPLYTSGGTDTLTGLPVGGSPITGSGGNYQVLRFHPSYARLMIFITGLSGTSPSIQFTINSPYGANFYTLPPITSPIYIYVIGNENRTIITYLNTNGQVLQQVELPYNIFLNGVAVSWSVAGTSPSITAYIHFEFEDEEEGE
Ga0208313_1045955F030159N/AIPYYPEMGTCRPYLTTLPDGKLKVTMGGYHADNYIDGIAIYIDKSVISPKGKALVTVPPLIFGQTSPGGSYYVISGNYGSGTIYHGVVAYTFGKKYARVYLNINAGNGAFVNIYTRYRSRSAPDLQQMYGNSPYPNNTAVYYPVVEMNFGTLVYATDYSYNMPYATDYPRTSKFRVDGQVLWVIIKQSSSPVFIELEGD
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