NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208662_100395

Scaffold Ga0208662_100395


Overview

Basic Information
Taxon OID3300026885 Open in IMG/M
Scaffold IDGa0208662_100395 Open in IMG/M
Source Dataset NameHot spring microbial mat communities from Yellowstone National Park, Wyoming, USA - OSPB_host_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17183
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (77.42%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Adnaviria → Zilligvirae → Taleaviricota → Tokiviricetes → Ligamenvirales → Lipothrixviridae → Alphalipothrixvirus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Yellowstone National Park
CoordinatesLat. (o)44.733Long. (o)-110.709Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F061983Metagenome / Metatranscriptome131Y
F070317Metagenome / Metatranscriptome123Y
F080247Metagenome / Metatranscriptome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0208662_10039526F070317GAGMSAMEELKELNLERIVKDAQEGEVCVVNKILKGKLTDLMPLIKDPATLSQKAMEFIQSRGDDIFYLFQCTTRGGRNVKLLVRQSFDPRSTFYQLMKKYKTIKVGDEVNVFYNLEKRRYDFLL
Ga0208662_1003958F080247N/AMIVWGKTIECIIDADVNYLNGELFNSQFRVKGKFLVFGNLYTLEKTTPGGETIQICSPVDATFMAYYQGMVAVMSFYIKERDIYANVSLTDPDTIKEFITMSTYYRKYGVSIPNILDKIMYRKVPT
Ga0208662_1003959F061983AGGAGGLKKYVFKVKVVQLKLINEEGVLSEQEFEHVKKTRIYKGMKVLEIKDLGFDSFWRFTHYYELVAVSEGGGLFDCYYSDVIDVKKLKDVGAIVVKEQDIQPVRTMKTLVAKWYNKKLVEEEKAYEICTKFIM
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Institute for Fundamental Biomedical Research
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