Scaffold Ga0209326_1002186

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209326_1002186

Scaffold Ga0209326_1002186

Overview

Basic Information
Taxon OID	3300026899 Open in IMG/M
Scaffold ID	Ga0209326_1002186 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_O3 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1594
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location Name	Davy Crockett National Forest, Groveton, Texas, USA
Coordinates	Lat. (^o)	31.11	Long. (^o)	-95.15	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001778	Metagenome / Metatranscriptome	636	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209326_10021862	F001778	AGGA	MSRFVDEGKRTSEPGPPPELPGAIERLTATFRELTDKRDRLEGDVEKLRRRLAEAEGELDQLQLYQLELSWRPPQLAEQRLEQYRDKLRAHLATVTSELDATKASIVEIRAVLVRQYAVAQASWRPAEALTVPCPACGQPCVPHRAAAAGRGWRKGWYECPADDCNSAWSARWSGGVHPVVKMGGL

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